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CVE PROGRAM SOURCE RECORD6.9 Medium

CVE-2026-31973

NULL pointer dereference in samtools cram-size

Description

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the `cram_decode_compression_header()` was missing. If the function returned an error, this could lead to a NULL pointer dereference. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

Affected products

Version statuses are supplied by the assigning organization. Consult the original record for detailed ranges and platform conditions.

samtools samtools

  • >= 1.17, < 1.21.1affected
  • >= 1.22, < 1.22.2affected
  • = 1.23affected

References